Development of nuclear SSR and chloroplast genome markers in diverse Liriodendron chinense germplasm based on low-coverage whole genome sequencing

Table 3 The indels makers in the L. chinense chloroplast genome

Position	Loction	Region	Length (bp)	GZST	JXLS	GZLP	HNSN
matK-trnK	Spacer	LSC	9	Insertion	Insertion	Deletion	Insertion
trnK-rps16	Spacer	LSC	15	Deletion	Deletion	Insertion	Insertion
rps16-trnQ	Spacer	LSC	2	Deletion	Insertion	Insertion	Insertion
rps16-trnQ	Spacer	LSC	24	Insertion	Insertion	Insertion	Deletion
trnG-trnR	Spacer	LSC	9	Insertion	Insertion	Insertion	Deletion
petN-psbM	Spacer	LSC	153	Insertion	Insertion	Insertion	Deletion
trnE-trnT	Spacer	LSC	5	Deletion	Deletion	Insertion	Deletion
trnfM-rps14	Spacer	LSC	30	Insertion	Insertion	Deletion	Deletion
ndhC-trnV	Spacer	LSC	126	Insertion	Insertion	Insertion	Deletion
ndhC-trnV	Spacer	LSC	458	Deletion	Deletion	Insertion	Insertion
clpP	Intron	LSC	3	Insertion	Insertion	Insertion	Deletion
petD-rps11	Spacer	LSC	15	Deletion	Deletion	Insertion	Deletion
rpl16	Intron	LSC	8	Deletion	Deletion	Insertion	Insertion
trnN-ycf1	Spacer	IR	9	Insertion	Insertion	Deletion	Insertion
ccsA-ycf1	Spacer	SSC	22	Deletion	Deletion	Deletion	Insertion
ndhE-ndhG	Spacer	SSC	6	Deletion	Deletion	Deletion	Insertion
ycf1-trnN	Spacer	IR	9	Insertion	Insertion	Deletion	Insertion

ISSN: 0717-6287